<?xml version="1.0" encoding="UTF-8"?>
<rss version="2.0"
	xmlns:content="http://purl.org/rss/1.0/modules/content/"
	xmlns:wfw="http://wellformedweb.org/CommentAPI/"
	xmlns:dc="http://purl.org/dc/elements/1.1/"
	xmlns:atom="http://www.w3.org/2005/Atom"
	xmlns:sy="http://purl.org/rss/1.0/modules/syndication/"
	xmlns:slash="http://purl.org/rss/1.0/modules/slash/"
	>

<channel>
	<title>A Fish Eye View &#187; vision</title>
	<atom:link href="http://masonposner.com/afisheyeview/tag/vision/feed/" rel="self" type="application/rss+xml" />
	<link>http://masonposner.com/afisheyeview</link>
	<description>blogging about comparative physiology with some marine and regional flavor</description>
	<lastBuildDate>Thu, 29 Jul 2010 18:39:41 +0000</lastBuildDate>
	<language>en</language>
	<sy:updatePeriod>hourly</sy:updatePeriod>
	<sy:updateFrequency>1</sy:updateFrequency>
	<generator>http://wordpress.org/?v=3.0</generator>
		<item>
		<title>Darwin and the eye</title>
		<link>http://masonposner.com/afisheyeview/2009/02/darwin-and-the-eye/</link>
		<comments>http://masonposner.com/afisheyeview/2009/02/darwin-and-the-eye/#comments</comments>
		<pubDate>Mon, 16 Feb 2009 03:29:03 +0000</pubDate>
		<dc:creator>Mason Posner</dc:creator>
				<category><![CDATA[Research]]></category>
		<category><![CDATA[evolution]]></category>
		<category><![CDATA[vision]]></category>

		<guid isPermaLink="false">http://masonposner.com/afisheyeview/?p=280</guid>
		<description><![CDATA[<p style="text-align: left;">One of the most interesting sections of Darwin&#8217;s On the Origin of Species may be his struggles with perceived perfection in nature.  In Chapter 6 Darwin confronts the organ of which William Paley would be most proud &#8211; the remarkable eye, and wonders how such a structure could have possibly evolved through his [...]]]></description>
			<content:encoded><![CDATA[<p style="text-align: left;"><a href="http://citizenship.typepad.com/blogfordarwin/"><img class="alignleft" title="Blog for Darwin" src="http://citizenship.typepad.com/blogfordarwin/DarwinBadge.gif" alt="" width="135" height="149" /></a>One of the most interesting sections of Darwin&#8217;s <em>On the Origin of Species</em> may be his struggles with perceived perfection in nature.  In <a href="http://scienceblogs.com/bloggingtheorigin/2009/01/chapter_6_difficulties_with_th.php">Chapter 6</a> Darwin confronts the organ of which William Paley would be most proud &#8211; the remarkable eye, and wonders how such a structure could have possibly evolved through his mechanism of natural selection.  Darwin, of course, goes on to provide a perfectly sensible explanation, but little did he know at the time how many evolutionary wonders the eye would hold.  Others have posted on the <a href="http://evolutionarynovelty.blogspot.com/2008/07/box-jellies-and-red-herring-of-eye.html">evolutionary intricacies of eye development</a>.  A vast literature has detailed how photon capturing opsin proteins in the retina become fine-tuned to the visual demands of specific environments.  Perhaps less appreciated is the evolution of the biological lens.  So I thought I would throw a little lens evolution into the Darwin celebratory mix.</p>
<p style="text-align: left;">Of course you do not need a lens to see.  The nautilus does just fine without one.  But the benefits of a lens are strong enough that they have evolved across the animal phyla, and even <a href="http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=1772300">occur in at least one protist</a>.  The function of the lens is to provide a dense structure that will refract light on its way to the retina.  A common solution for making a lens is to express proteins at very high concentrations, especially in aquatic eyes that do not get the benefit of refraction from the cornea.  But interestingly, different organisms use different proteins to do the job.  And as Darwin would have predicted, these proteins are not created de novo, but are borrowed from other parts of the body.  While debates rage about whether the developmental mechanisms to make an eye evolved once or multiple times, the lens clearly has multiple origins.  And each time, organisms have drawn from their biochemical toolbox when producing proteins at high concentration in the lens.  These densely packed lens proteins have diverse evolutionary sources, but they are all referred to as lens crystallins.</p>
<p style="text-align: left;">Where did lens crystallins come from?  Some are basic housekeeping enzymes, others are protective proteins produced by cells when they are stressed and others have more mysterious origins.  But many of the proteins recruited to build lenses maintain their original function in other parts of the body, and are encoded by the same gene.  That means that one DNA blueprint can simultaneously make a metabolic enzyme like lactate dehydrogenase throughout the body, but when this <a href="http://icb.oxfordjournals.org/cgi/content/full/43/4/492">gene is used in the lens of a duck</a>, its protein product becomes a structural material for bending light.  This concept of gene-sharing, where one gene contains the code for making protein with multiple functions, was first proposed to explain the evolution of lens crystallins.</p>
<p style="text-align: left;">Were these lens crystallins recruited because of their original enzymatic functions, or were they simply convenient building blocks for the dense packing required to make a lens?  For many crystallins the answer is &#8211; both.  My lab does research on an abundant lens crystallin family found in the vertebrate lens, the alpha crystallins.  All vertebrates contain at least two closely related alpha crystallins that resulted from a gene duplication event near the beginning of vertebrate evolution.  When the gene sequences for the alpha crystallins were resolved in the late 1980&#8242;s it was clear that they were small heat shock proteins.  This family of proteins is produced by cells that are under stress &#8211; perhaps because they are too hot, or are encountering dangerously high oxygen levels.  </p>
<p style="text-align: left;">So why was a stress-induced protective protein being used to make up to 30% of a vertebrate lens?  There are two reasons.  First, it turns out that alpha crystallins make great building blocks.  You can pack them in at very high concentrations and still maintain the necessary protein fluidity needed in the lens.  But second, the same protective function that they serve in other parts of the body comes in very handy in the lens.  The central cells of the lens destroy their own nuclei and other cellular machinery to prevent the scattering of light as it passes through the retina.  No nucleus means no new protein, so our lens cells must make do with the same proteins for their entire life.  Old proteins get shabby, fall apart, and then start sticking to each other.  This sticky mess interferes with the passage of light, and voila &#8211; you now have a cataract.  But alpha crystallins use their stress protective function to prevent this aggregation of old, decrepit proteins, preserving lens transparency until they are used up, generally starting at around age 50 for humans.  </p>
<p style="text-align: left;">At the macroevolutionary scale a wide array of proteins have been co-opted as lens building blocks because of their structural and enzymatic properties.  My lab is currently investigating the microevolutionary story.  How do small changes in alpha-crystallins alter their ability to function at different temperatures, for example?  Darwin perhaps sensed that the eye would yield excellent examples of his two great ideas: descent with modification and natural selection.</p>
]]></content:encoded>
			<wfw:commentRss>http://masonposner.com/afisheyeview/2009/02/darwin-and-the-eye/feed/</wfw:commentRss>
		<slash:comments>1</slash:comments>
		</item>
		<item>
		<title>Fish eyes do the coolest things</title>
		<link>http://masonposner.com/afisheyeview/2008/12/fish-eyes-do-the-coolest-things/</link>
		<comments>http://masonposner.com/afisheyeview/2008/12/fish-eyes-do-the-coolest-things/#comments</comments>
		<pubDate>Wed, 31 Dec 2008 19:14:41 +0000</pubDate>
		<dc:creator>Mason Posner</dc:creator>
				<category><![CDATA[Marine]]></category>
		<category><![CDATA[Research]]></category>
		<category><![CDATA[fish]]></category>
		<category><![CDATA[vision]]></category>

		<guid isPermaLink="false">http://masonposner.com/afisheyeview/?p=120</guid>
		<description><![CDATA[<p style="text-align: left;">Ed Yong over at Not Exactly Rocket Science beat me to the punch on this one.  You should check out his summary of a new paper by a group of excellent fish eye people on the spookfish, Dolichopteryx longipes.  Like many mesopelagic fishes that live in these low light conditions, the spookfish has tubular [...]]]></description>
			<content:encoded><![CDATA[<p style="text-align: left;">Ed Yong over at Not Exactly Rocket Science beat me to the punch on this one.  You should check out <a href="http://scienceblogs.com/notrocketscience/2008/12/spookfish_eye_uses_mirrors_instead_of_a_lens.php#more">his summary</a> of a new paper by a group of excellent fish eye people on the spookfish, <em>Dolichopteryx longipes</em>.  Like many mesopelagic fishes that live in these low light conditions, the spookfish has tubular shaped eyes that look straight up to try and spot the shadows cast by soon to be prey items.  This oddly shaped eye allows the fish to collect as much light as possible from above, but it does not allow the fish to see around or down.  To do this some mesopelagic fishes have a secondary retina that looks laterally and ventrally, but this part of the eye does not use a lens to focus light.  It was thought that the images produced by this secondary retina would be crude, but the new paper by <a href="http://www.sciencedirect.com/science?_ob=ArticleURL&amp;_udi=B6VRT-4V719NP-5&amp;_user=10&amp;_rdoc=1&amp;_fmt=&amp;_orig=search&amp;_sort=d&amp;view=c&amp;_acct=C000050221&amp;_version=1&amp;_urlVersion=0&amp;_userid=10&amp;md5=d24d13abbe043606708fc0462ff2a74b">Wagner et al.</a> on the spookfish shows that instead of a lens, this species uses a reflective surface, yes a mirror, to focus light on its secondary retina.  This is the first described example of a vertebrate eye that uses reflective optics to focus light, but may not be the last.</p>
]]></content:encoded>
			<wfw:commentRss>http://masonposner.com/afisheyeview/2008/12/fish-eyes-do-the-coolest-things/feed/</wfw:commentRss>
		<slash:comments>0</slash:comments>
		</item>
		<item>
		<title>Seeing with the ancient brain</title>
		<link>http://masonposner.com/afisheyeview/2008/12/seeing-with-the-ancient-brain/</link>
		<comments>http://masonposner.com/afisheyeview/2008/12/seeing-with-the-ancient-brain/#comments</comments>
		<pubDate>Fri, 26 Dec 2008 14:17:53 +0000</pubDate>
		<dc:creator>Mason Posner</dc:creator>
				<category><![CDATA[Research]]></category>
		<category><![CDATA[physiology]]></category>
		<category><![CDATA[vision]]></category>

		<guid isPermaLink="false">http://masonposner.com/afisheyeview/?p=77</guid>
		<description><![CDATA[<p></p>
<p style="text-align: left;">We form our conscious sense of vision using the occipital lobe of our cerebrum, the uppermost portion of the brain that has increased in size during mammalian (and independently in bird) evolution.  Other vertebrates rely more heavily on other regions of the brain, especially the midbrain, to process sight.  We still use a [...]]]></description>
			<content:encoded><![CDATA[<p><span style="float: left; padding: 5px;"><a href="http://www.researchblogging.org"><img style="border:0;" src="http://www.researchblogging.org/public/citation_icons/rb2_large_gray.png" alt="ResearchBlogging.org" /></a></span></p>
<p style="text-align: left;">We form our conscious sense of vision using the occipital lobe of our cerebrum, the uppermost portion of the brain that has increased in size during mammalian (and independently in bird) evolution.  Other vertebrates rely more heavily on other regions of the brain, especially the midbrain, to process sight.  We still use a region in the midbrain, the superior colliculi, for visual reflexes and tracking objects with our eyes.</p>
<p style="text-align: left;">A paper in <em><a href="http://www.cell.com/current-biology/abstract/S0960-9822(08)01433-4">Current Biology</a></em> provides the best evidence to date that functionally blind humans can use these more ancient brain regions to &#8220;see&#8221; their environment &#8211; an ability that is called blindsight.  The subject in this study, TN, damaged both primary visual cortices during two successive strokes.  Lack of activity in these brain regions was confirmed by brain imaging.  <a href="http://news.bbc.co.uk/1/hi/health/7794766.stm">Amazingly he was still able to navigate an obstacle course, clearly sensing objects in his way.</a></p>
<p style="text-align: left;">Proving a negative is always difficult, so the authors go to some effort to convince us that TN truly cannot consciously see.  They also argue against the possibility that he is using echolocation to sense the objects in his path and note a previous study on a blind monkey that was able to similarly navigate obastacles.  While the authors of this new paper did not identify the brain regions used by TN in the video above, one possibility is that he is relying on his more ancient vertebrate midbrain.</p>
<p style="text-align: left;">The same authors previously showed that TN could also respond to human facial expressions &#8211; for example a scary looking face would produce electrical activity in the fear regions of the amygdala.  In this case it was not the midbrain, but deeper regions of the cerebrum being used.  Both of these studies highlight the complex ways that visual stimuli are processed in the brain.</p>
<p><span class="Z3988" title="ctx_ver=Z39.88-2004&#038;rft_val_fmt=info%3Aofi%2Ffmt%3Akev%3Amtx%3Ajournal&#038;rft.jtitle=Current+Biology&#038;rft_id=info%3Adoi%2F10.1016%2Fj.cub.2008.11.002&#038;rfr_id=info%3Asid%2Fresearchblogging.org&#038;rft.atitle=Intact+navigation+skills+after+bilateral+loss+of+striate+cortex&#038;rft.issn=09609822&#038;rft.date=2008&#038;rft.volume=18&#038;rft.issue=24&#038;rft.spage=0&#038;rft.epage=0&#038;rft.artnum=http%3A%2F%2Flinkinghub.elsevier.com%2Fretrieve%2Fpii%2FS0960982208014334&#038;rft.au=B+DEGELDER&#038;rft.au=M+TAMIETTO&#038;rft.au=G+VANBOXTEL&#038;rft.au=R+GOEBEL&#038;rft.au=A+SAHRAIE&#038;rft.au=J+VANDENSTOCK&#038;rft.au=B+STIENEN&#038;rft.au=L+WEISKRANTZ&#038;rft.au=A+PEGNA&#038;rfe_dat=bpr3.included=1;bpr3.tags=Biology%2CNeuroscience">B DEGELDER, M TAMIETTO, G VANBOXTEL, R GOEBEL, A SAHRAIE, J VANDENSTOCK, B STIENEN, L WEISKRANTZ, A PEGNA (2008). Intact navigation skills after bilateral loss of striate cortex <span style="font-style: italic;">Current Biology, 18</span> (24) DOI: <a rev="review" href="http://dx.doi.org/10.1016/j.cub.2008.11.002">10.1016/j.cub.2008.11.002</a></span></p>
]]></content:encoded>
			<wfw:commentRss>http://masonposner.com/afisheyeview/2008/12/seeing-with-the-ancient-brain/feed/</wfw:commentRss>
		<slash:comments>0</slash:comments>
		</item>
	</channel>
</rss>
